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Environmental Monitoring of Bacteria

Environmental Monitoring of Bacteria

Publisher Springer, Berlin
Year
Pages 333
Version paperback
Language English
ISBN 9781617370779
Categories Environmental monitoring
Delivery to United States

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Book description

In Environmental Monitoring of Bacteria, Clive Edwards and his distinguished panel of researchers bring together a collection of detailed molecular methods for the environmental monitoring of bacterial populations. These state-of-the-art methods include techniques for the recovery of cells, for the analysis of whole cells, and for the molecular study of target species and heterogeneous populations. Many of the methods enable bacteria to be monitored in their natural environments without culturing, and specifically address the difficult problem that only a small proportion of bacteria in any ecosystem can be cultured by traditional methods. In addition to providing many eminently reproducible methods, the distinguished contributors review the problems of monitoring bacteria in natural environments and discuss the principles by which the methods work.

Taking full advantage of the exciting research in recent years that has challenged some long-held principles of traditional microbiology, Environmental Monitoring of Bacteria gives timely and practical access to powerfultechniques that allow the study of bacterial ecology as communities, as single cells, or at the molecular level.




Environmental Monitoring of Bacteria

Table of contents

Some Problems Posed by Natural Environments for Monitoring Microorganisms, Clive Edwards. Sampling Sediment and Soil: Use of Coring Devices, Roger Pickup, Glenn Rhodes, and Grahame Hall. Sampling Water Bodies: Tangetial Flow Filtration, Roger Pickup, Helen Mallinson, and Glenn Rhodes. Dielectrophoresis, D. W. Pimbley, P. D. Patel, and C. J. Robertson. Flow Cytometry and Cell Sorting: Rapid Analysis and Separation of Individual Bacterial Cells from Natural Environments, Jonathan Porter. Magnetic Particle-Based Separation Techniques for Monitoring Bacteria from Natural Environments, Jonathan Porter and Roger Pickup. DNA Extraction from Natural Environments, Kenneth D. Bruce, Peter Strike, and Donald A. Ritchie. Automated Sequencing of DNA Retrieved from Environmental Samples, Mathew Upton. Analysis of DNA Sequences, Mathew Upton. Fluorescent Polymerase Chain Reaction/Restriction Fragment Length Polymorphism Monitoring of Genes Amplified Directly from Bacterial Communities in Soils and Sediments, Kenneth D. Bruce and Mark R. Hughes. Recovery and Analysis of Ribosomal RNA Sequences from the Environment, Ian M. Head. Application of Denaturing Gradient Gel Electrophoresis to Microbial Ecology, Richard Hastings. Reporter Gene Expression for Monitoring Microorganisms in the Environment, James R. Firth. Characterizing Microorganisms in the Environment by Fatty Acid Analysis, Ian P. Thompson, Mark J. Bailey, and Andrew K. Lilley. Fluorescent In Situ Hybridization and the Analysis of the Single Cell, Anthony G. O'Donnell and Andrew S. Whiteley. Specific Detection, Viability Assessment, and Macromolecular Staining of Bacteria for Flow Cytometry, Jonathan Porter. Confocal Laser Scanning Microscopy of Environmental Samples, David Lloyd, Anthony J. Hayes, and James R. Ralphs. Monitoring Microbial Activities Using Membrane Inlet Mass Spectrometry, James R. Firth and Clive Edwards. Experimental Biofilms and Their Applications in the Study of Environmental Processes, Joanna C. Raynerand Hilary M. Lappin-Scott. Establishment of Experimental Biofilms Using the Modified Robbins Device and Flow Cells, Luanne Hall-Stoodley, Joanna C. Rayner, Paul Stoodley, and Hilary M. Lappin-Scott. Index.

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